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  • Homepage [btep. ccr. cancer. gov]
    Bioinformatics Training Education Program Enabling scientists to understand and analyze their own experimental data by providing instruction and training in bioinformatics software, databases, analyses techniques, and emerging technologies
  • BTEP News - Cancer
    Qiagen Ingenuity Pathway Analysis (IPA): Deep-dive trainings in June Published On: May 7, 2021 Category: Announcement By: amy stonelake@nih gov Introducing Ingenuity Pathway Analysis (IPA) deep-dive trainings Part 1: Deep dive into IPA core and comparison analyses Users will learn how to: Effectively interpret the different results of IPA core and comparison analyses for discovery of novel
  • BTEP: BTEP: Introduction to Bioinformatics Resources
    We will look at the information available on the BTEP website, such as the NIH Bioinformatics Calendar, training opportunities, and upcoming events We will show new website pages with in-depth content to help scientists understand and utilize the resources available
  • BTEP News - Cancer
    Michael Schatz, JHU in BTEP Distinguished Speakers Seminar Series, June 10 Published On: April 11, 2021 Category: Webinar By: amy stonelake@nih gov Registration Meeting Link Title: Long Read Sequencing for Cancer Genomics and Beyond Date: June 10 Time: 1 -2 PM Location: Online Webinar Abstract: Long read, single molecule sequencing from Pacific Biosciences (PacBio) and Oxford Nanopore are
  • BTEP Course: Introduction to Bioinformatics Summer Series
    A series of 6 stand-alone classes to learn about bioinformatics Will be held on Tuesdays at 1 PM in June and July You can attend any class, just one class, or all classes Introduction to Bioinformatics Resources at NCI Central Dogma of Molecular Biology: Analyzing DNA, RNA, and Proteins Keeping your Data FAIR: Organizing, Managing, and Sharing your Data Introduction to High Performance
  • Talk4_scRNA-Seq_Analysis_VK. pptx - Cancer
    Bulk RNA-Seq Impossible to conclude if these differences are due to a uniform property of all cells within a tumor gene group or due to additive effects of just a few sub-clones within a tumor gene group
  • Retrieving data from NCBI with E Utilities - btep. ccr. cancer. gov
    EFetch is one of NCBI's "E-Utilities" that allows access to NCBI databases from the command line Each utility (EInfo, ESearch, EPost, EFetch, ELink, EGQuery, ESpell, ECitMatch) has required parameters They are the gateway to the "Entrez system, which currently includes 38 databases covering a variety of biomedical data, including nucleotide and protein sequences, gene records, three
  • Working with FASTQ and FASTA data - btep. ccr. cancer. gov
    The bulk RNA-Seq test data we've been working with is in FASTQ format We'd like to do a BLAST search on a couple of these sequences Data must be in FASTA format to do BLAST How can we transform FASTQ to FASTA format?
  • Practical Guide to Interpreting RNA-seq Data - Cancer
    Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research
  • Cancer
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